Cell information vs cell information on dimension reduction

In this tab, users can visualise two cell informations side-by-side on low-dimensional representions.

In this tab, users can visualise two gene expressions side-by-side on low-dimensional representions.

In this tab, users can visualise the coexpression of two genes on low-dimensional representions.

Cell information / gene expression violin plot / box plot

In this tab, users can visualise the gene expression or continuous cell information (e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).

Proportion / cell numbers across different cell information

In this tab, users can visualise the composition of single cells based on one discrete cell information across another discrete cell information. Usage examples include the library or cellcycle composition across clusters.

Gene expression bubbleplot / heatmap

In this tab, users can visualise the gene expression patterns of multiple genes grouped by categorical cell information (e.g. library / cluster).
The normalised expression are averaged, log-transformed and then plotted.

Change the dataset

In this tab, users can change the dataset.

Reference:

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scRNAseq Database

This database is a collection of single cell RNA-seq data.

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This webpage was modified from ShinyCell

Login the dataset

In this tab, users login the dataset to see protected data.